SNP Profiles of PA 156 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGAACCAACCGGGGAACC
1._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
2._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
3._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
4._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
5._RUQ_1531
__ACGGCC_AACCAACC__AA_
6._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
7._PA_156_[PER]
__ACGG__AACCAACC__AA_
8._PA_156_[PER]
__ACGGCC_AA_AACC__AA_
9._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
10._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
11._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
12._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
13._GC-05-137-3-39
TTCCACGG_GGAACCAACCGGGGAACC
14._RUQ_1531
__AC_____AA_GG___
15._PA156[PER]
__AC_CCGGAAGGAA__GGAACC
16._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
17._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
18._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
19._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
20._GC-05-138-3-40
TTCCAATT_GGAACCAACTGGGGAACC
21._PA_156_[PER]
__AATTCC_AACCAACT__AA_
22._PA_156_[PER]
__AATTCC_AACCAACT__AA_
23._PA_156_[PER]
__AATTCC_AACCAACT__AA_
24._PA_156_[PER]
__AATTCC_AACCAACT__AA_
25._PA_156_[PER]
__AATT__AACCAACT__AA_
26._RUQ_1531
AACCACCCGGGGAAGGAAGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AAACCCTTCGCCTTTTCTGGGGTTACGG
1._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
2._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
3._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
4._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
5._RUQ_1531
AAACCCTTCGCC_TT_GG___GG
6._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
7._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
8._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
9._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
10._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
11._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
12._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
13._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
14._RUQ_1531
_AC__CGCCTT_CTGGGG_ACGG
15._PA156[PER]
____CGCCTT______CC
16._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
17._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
18._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
19._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
20._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
21._PA_156_[PER]
AACCCTGTCGAA_CT_GG___CG
22._PA_156_[PER]
AACCCTGTCGAA_CT_GG___CG
23._PA_156_[PER]
AACCCTGTCGAA_CT_GG___CG
24._PA_156_[PER]
AACCCTGTCGAA_CT_GG___CG
25._PA_156_[PER]
AACCCTGTCGAA_CT_GG___CG
26._RUQ_1531
_AC_AACGCCAAAA_CCGGAAACCC
 2930313233343536373839404142
_Input profile
CCCCGGAGCCGGGGTTTTTTCTCTGGAG
1._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
2._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
3._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
4._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
5._RUQ_1531
_CC_AGCC___TT__CTGGAG
6._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
7._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
8._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
9._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
10._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
11._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
12._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
13._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
14._RUQ_1531
__AGAG____TT___GG_
15._PA156[PER]
GGCC__CC_GGTT__CT_CC_
16._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
17._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
18._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
19._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
20._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
21._PA_156_[PER]
_CT_AGCC___TT__CTGGAG
22._PA_156_[PER]
_CT_AGCC___TT__CTGGAG
23._PA_156_[PER]
_CT_AGCC___TT__CTGGAG
24._PA_156_[PER]
_CT_AGCC___TT__CTGGAG
25._PA_156_[PER]
_CT_AGCC___TT__CTGGAG
26._RUQ_1531
_GGAGAGGGCCGG_AAAAAGAGCCAG

Input profile: PA_156_[PER] RUQ_1531

 
 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_156_[PER]

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER] RUQ_1531

identical
24 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
24 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
23 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

9._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

10._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

98.8 %
41 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._PA_156_[PER] RUQ_1531

96.9 %
16 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._PA_156_[PER] PA156[PER]

80 %
20 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

78 %
41 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER]

75 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

22._PA_156_[PER]

75 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

23._PA_156_[PER]

75 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

75 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER]

73.9 %
23 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

44.6 %
37 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484